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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15118046_15121311_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15118046 - 15121311
Intron Length:
3266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
CTGTCATTGACT
Flanking Amino Acid:
EFSSVLAAQLKYHSESKGTD
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
0.9
73
31.9
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
85
0.79
0.9
79.9
37.7
Minor 5ss
35.3
-1.7
3.1
45.7
43.4
Minor BPS
66.6
0.6
1.7
80.28
41.8

Associated Gene:

Gene:
VAMP7
Ensembl Gene ID:
ENSAPLG00000012771
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013304
15114164 - 15124203
10040