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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15122034_15123476_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15122034 - 15123476
Intron Length:
1443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
CTTTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGAAAT
U12 Branch Point Sequence:
GCTGCTTTACTT
Flanking Amino Acid:
IDKTENLVDSSVTFKTTSRN
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
64.7
46.6
Major BPS
58.4
0.21
1.2
65
38.7
Major PPT
89.5
0.89
0.6
84.5
23.2
Minor 5ss
34.8
-1.7
3.4
48.4
47.2
Minor BPS
53.2
0.18
1.7
67.55
44.3

Associated Gene:

Gene:
VAMP7
Ensembl Gene ID:
ENSAPLG00000012771
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013304
15114164 - 15124203
10040