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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15123570_15124155_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15123570 - 15124155
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTCTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
CTCTGCTGAACT
Flanking Amino Acid:
LTIIIIIVSIVIIYIIVSAA
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75.4
33.7
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
87.1
0.84
0.7
80.8
31.2
Minor 5ss
38.6
-1.3
2.7
49.8
40.3
Minor BPS
58.5
0.35
2
76.42
46.1

Associated Gene:

Gene:
VAMP7
Ensembl Gene ID:
ENSAPLG00000012771
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013304
15114164 - 15124203
10040