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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15140119_15142565_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15140119 - 15142565
Intron Length:
2447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTTTCTGTATTT
Flanking Amino Acid:
CRTLINRLDQASRWKNLYCS
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75.9
35.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
88.6
0.87
0.6
82
30
Minor 5ss
39.6
-1.2
2.8
49.3
46.9
Minor BPS
56.4
0.28
2.2
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012884
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013423
15129906 - 15154435
24530