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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15158715_15159069_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15158715 - 15159069
Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGACGG
5'SS Class:
major
3'SS Sequence:
TGTTCCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
TGTTCCTTCACA
Flanking Amino Acid:
HSYLSSAPPQRSSEPVCTYC
Intron Amino Acid Position:
773

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
57.3
47.4
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
81.8
0.72
0.8
76.1
32.5
Minor 5ss
30
-2.3
3.3
38.8
46.3
Minor BPS
75.9
0.81
1.7
84.27
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012906
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045175
15155407 - 15186796
31390
ENSAPLT00000036016
15156876 - 15186796
29921
ENSAPLT00000025902
15157976 - 15185925
27950