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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15158715_15160663_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15158715 - 15160663
Intron Length:
1949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
TGTTCCTTCACA
Flanking Amino Acid:
SELSASPRYGRSSEPVCTYC
Intron Amino Acid Position:
803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
81.8
0.72
0.8
76.1
32.5
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
75.9
0.81
1.7
84.27
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012906
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013431
15157976 - 15186796
28821