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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15163533_15164843_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15163533 - 15164843
Intron Length:
1311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCTTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TACAATGTAATC
Flanking Amino Acid:
YADSQVFSTRRPIPDYEGRV
Intron Amino Acid Position:
676

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
72.1
0.5
1
65.2
41.1
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
43.8
-0.4
2.1
52.69
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012906
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045175
15155407 - 15186796
31390
ENSAPLT00000036016
15156876 - 15186796
29921
ENSAPLT00000025902
15157976 - 15185925
27950
ENSAPLT00000013431
15157976 - 15186796
28821