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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15165881_15167147_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15165881 - 15167147
Intron Length:
1267

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAT
U12 Branch Point Sequence:
TACTTCTGCAGA
Flanking Amino Acid:
YVQSEEVASRRPSSLPRESS
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.9
74.6
38.7
Major BPS
53.7
0.09
1.4
46.5
47
Major PPT
76
0.59
1
72.7
37.5
Minor 5ss
19.4
-3.5
3.9
28.7
43.6
Minor BPS
44.5
-0.4
2.1
56.47
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012906
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013431
15157976 - 15186796
28821
ENSAPLT00000045175
15155407 - 15186796
31390
ENSAPLT00000036016
15156876 - 15186796
29921
ENSAPLT00000025902
15157976 - 15185925
27950