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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15171978_15173035_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15171978 - 15173035
Intron Length:
1058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GCTTTCTAAAGT
Flanking Amino Acid:
SRATVASTNGSHSEHTEANN
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
84.8
28.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
89.9
0.9
0.6
88.2
21.5
Minor 5ss
40.3
-1.1
3.3
55.3
48.9
Minor BPS
53.4
0.19
2
71.56
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012906
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045175
15155407 - 15186796
31390
ENSAPLT00000025902
15157976 - 15185925
27950
ENSAPLT00000013431
15157976 - 15186796
28821