About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15173114_15174677_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15173114 - 15174677
Intron Length:
1564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTGTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
CTTATCTTACTG
Flanking Amino Acid:
SLETVPQRGDGDKTLEEKSE
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
84.6
33.3
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
78.5
0.64
0.9
72.8
37.5
Minor 5ss
39
-1.2
3.1
50.4
45.6
Minor BPS
52.8
-0
1.7
58.96
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012906
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025902
15157976 - 15185925
27950
ENSAPLT00000013431
15157976 - 15186796
28821
ENSAPLT00000045175
15155407 - 15186796
31390
ENSAPLT00000036016
15156876 - 15186796
29921