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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15175970_15177540_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15175970 - 15177540
Intron Length:
1571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGATC
5'SS Class:
major
3'SS Sequence:
GTTGTTTTATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGTTGTTTTATT
Flanking Amino Acid:
GSCKFTPDDNSTNGLRKTTA
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
71.4
38.2
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
74.7
0.56
0.9
74.6
40
Minor 5ss
43
-0.8
3.1
60.3
44.4
Minor BPS
53.3
0.18
2
76.14
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012906
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036016
15156876 - 15186796
29921
ENSAPLT00000025902
15157976 - 15185925
27950
ENSAPLT00000013431
15157976 - 15186796
28821
ENSAPLT00000045175
15155407 - 15186796
31390