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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15179530_15180533_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15179530 - 15180533
Intron Length:
1004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTGAC
U12 Branch Point Sequence:
AGAATGTGACCC
Flanking Amino Acid:
VPFSPDEHKKRTEAANSVLR
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
74.4
41.9
Major BPS
62.5
0.31
1.2
54.8
42.1
Major PPT
87.5
0.84
0.6
85
22.6
Minor 5ss
49.9
-0
2.8
73.5
43.2
Minor BPS
37.8
-0.9
2.1
43.74
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012906
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045175
15155407 - 15186796
31390
ENSAPLT00000036016
15156876 - 15186796
29921
ENSAPLT00000025902
15157976 - 15185925
27950
ENSAPLT00000013431
15157976 - 15186796
28821