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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15180615_15181250_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15180615 - 15181250
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
CTTCCGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTTAC
U12 Branch Point Sequence:
GTTCCCTTACTC
Flanking Amino Acid:
YRMTTEDYKKLAPYNVKQKS
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
71.2
40.3
Major BPS
56.6
0.16
1.1
48.9
36.2
Major PPT
83.1
0.75
0.8
80.1
31.9
Minor 5ss
36.8
-1.5
2.9
52.3
44.3
Minor BPS
64.6
0.44
1.6
72.67
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012906
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036016
15156876 - 15186796
29921
ENSAPLT00000025902
15157976 - 15185925
27950
ENSAPLT00000013431
15157976 - 15186796
28821
ENSAPLT00000045175
15155407 - 15186796
31390