Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15185176_15186718_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15185176 - 15186718

Intron Length:

1543

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATTCCT

5'SS Class:

strong_major

3'SS Sequence:

CTGCCTCCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGACAA

U12 Branch Point Sequence:

CCTTCCTTGCCC

Flanking Amino Acid:

MMSLGVNKGRVITPTDED

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.83

0.9

77.3

37.6

Major BPS

58.4

0.21

1.2

39.8

Major PPT

66.4

0.37

0.8

58.3

33.1

Minor 5ss

36.9

-1.5

2.9

51.8

44.6

Minor BPS

47.2

-0.2

3.5

69.25

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012906

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045175

15155407 - 15186796

31390

ENSAPLT00000036016

15156876 - 15186796

29921

ENSAPLT00000013431

15157976 - 15186796

28821