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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15210720_15211377_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15210720 - 15211377
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CGGTTTTCATCT
Flanking Amino Acid:
LQKDSPLCGKAFHITNDEPI
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
100
1.24
0.5
100
0
Major PPT
90.3
0.91
0.6
88.5
21.1
Minor 5ss
31.7
-2.1
3.1
39.7
45.9
Minor BPS
46.4
-0.1
1.8
59.81
44.2

Associated Gene:

Gene:
NSDHL
Ensembl Gene ID:
ENSAPLG00000013097
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013641
15210384 - 15219708
9325
ENSAPLT00000038859
15210384 - 15218156
7773
ENSAPLT00000032660
15210107 - 15217630
7524
ENSAPLT00000027066
15210107 - 15221186
11080