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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15211481_15213071_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15211481 - 15213071
Intron Length:
1591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCAAG
5'SS Class:
major
3'SS Sequence:
TTCATCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTCCTTTCATC
Flanking Amino Acid:
AKSGKMKFIIGDGKNLVDFT
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
64.9
42.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
77.5
0.62
0.9
72.8
37.3
Minor 5ss
32.8
-2
2.8
31.4
42.6
Minor BPS
63
0.39
1.7
75.34
35.5

Associated Gene:

Gene:
NSDHL
Ensembl Gene ID:
ENSAPLG00000013097
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038859
15210384 - 15218156
7773
ENSAPLT00000032660
15210107 - 15217630
7524
ENSAPLT00000027066
15210107 - 15221186
11080
ENSAPLT00000013641
15210384 - 15219708
9325