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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15215189_15216115_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15215189 - 15216115
Intron Length:
927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TCATCCATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTTCTCATCC
Flanking Amino Acid:
IEACKEAGVQKLVLTSSASV
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76.7
0.6
0.9
70.3
34.7
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
57
0.2
1.8
69.92
41.8

Associated Gene:

Gene:
NSDHL
Ensembl Gene ID:
ENSAPLG00000013097
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032660
15210107 - 15217630
7524
ENSAPLT00000027066
15210107 - 15221186
11080
ENSAPLT00000013641
15210384 - 15219708
9325
ENSAPLT00000038859
15210384 - 15218156
7773