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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15216263_15217169_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15216263 - 15217169
Intron Length:
907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGACT
5'SS Class:
major
3'SS Sequence:
TGTCTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCTTGCACAACG
Flanking Amino Acid:
FFLGDLCDKEALLPALQGVS
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.6
40.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
82
0.72
0.8
77.5
31.3
Minor 5ss
33.2
-1.9
3.5
49.6
46.4
Minor BPS
47
-0.3
2.3
60.52
46.9

Associated Gene:

Gene:
NSDHL
Ensembl Gene ID:
ENSAPLG00000013097
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013641
15210384 - 15219708
9325
ENSAPLT00000038859
15210384 - 15218156
7773
ENSAPLT00000032660
15210107 - 15217630
7524
ENSAPLT00000027066
15210107 - 15221186
11080