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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15217332_15218063_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
15217332 - 15218063
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ACTGTCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTCTTGTAACG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
81.3
32.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
79.8
0.67
0.9
73.2
36.5
Minor 5ss
31.8
-2.1
3.6
48.2
47.9
Minor BPS
54.6
0.01
2.1
67.89
40.1

Associated Gene:

Gene:
NSDHL
Ensembl Gene ID:
ENSAPLG00000013097
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038859
15210384 - 15218156
7773