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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15217332_15219657_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15217332 - 15219657
Intron Length:
2326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ACTGTCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTCTTGTAACG
Flanking Amino Acid:
MAARLRSAGKKCTVIGG
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.4
37.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
79.8
0.67
0.9
73.2
36.5
Minor 5ss
30.1
-2.3
2.6
34.1
41.4
Minor BPS
54.6
0.01
2.1
67.89
40.1

Associated Gene:

Gene:
NSDHL
Ensembl Gene ID:
ENSAPLG00000013097
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027066
15210107 - 15221186
11080