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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15219709_15220695_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
15219709 - 15220695
Intron Length:
987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAA
U12 Branch Point Sequence:
TGTGAATAAAAC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.5
39.2
Major BPS
56.5
0.16
0.9
63.3
29.1
Major PPT
92.8
0.96
0.5
93.3
15.6
Minor 5ss
31.9
-2.1
3
38.5
46.6
Minor BPS
41.9
-0.6
2.1
54.75
42.5

Associated Gene:

Gene:
NSDHL
Ensembl Gene ID:
ENSAPLG00000013097
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027066
15210107 - 15221186
11080