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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15223998_15224630_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15223998 - 15224630
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCTCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TTTTCTTTAAAC
Flanking Amino Acid:
DFLAVMTQKMAEKDSKEEIL
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
77.7
31.7
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
73.7
0.53
1
78.7
27.3
Minor 5ss
41.3
-1
2.5
47.2
43.7
Minor BPS
82.1
0.99
1.2
87.66
28.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023224
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031406
15221959 - 15224933
2975