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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15225138_15227643_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
15225138 - 15227643
Intron Length:
2506

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAA|GCTATCATG
5'SS Class:
weak_major
3'SS Sequence:
CAGCAGCAGGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCTCCAT
U12 Branch Point Sequence:
GGTCCCTCCATG
Flanking Amino Acid:
PVESCGIFTLNGAAPSPAFP
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.6
0.06
1.4
57.8
47
Major BPS
52.4
0.06
1.3
64
41.7
Major PPT
39.9
-0.5
1.6
31.7
35.8
Minor 5ss
30.8
-2.2
3.9
42
38.5
Minor BPS
45.6
-0.4
2
50.97
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013441
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013991
15225073 - 15231307
6235