Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15227762_15229499_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15227762 - 15229499

Intron Length:

1738

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCAAGGGGC

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTTTGGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTGAT

U12 Branch Point Sequence:

ATTTGCACACAG

Flanking Amino Acid:

SGQMDVGDLKITMRALGCEL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.7

1.06

0.8

28.9

Major BPS

78.6

0.71

1.2

71.4

45.1

Major PPT

81.8

0.72

0.9

79.9

32.1

Minor 5ss

19.2

-3.5

42.8

Minor BPS

37.8

-1

2.3

48.42

44.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013441

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027620

15227615 - 15231307

3693

ENSAPLT00000013991

15225073 - 15231307

6235