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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15230983_15231220_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15230983 - 15231220
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGAA
5'SS Class:
major
3'SS Sequence:
TGCTATCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
GTCTCCCAAATC
Flanking Amino Acid:
GEDITDEELQVMIDEADVDG
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
71.4
33.7
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
71.9
0.49
0.9
65
36.1
Minor 5ss
34.4
-1.8
2.9
40.7
45.6
Minor BPS
49.6
-0
2
63.53
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013441
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027620
15227615 - 15231307
3693
ENSAPLT00000013991
15225073 - 15231307
6235