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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15233966_15234544_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15233966 - 15234544
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTTGAT
U12 Branch Point Sequence:
CTCCTCTGCACA
Flanking Amino Acid:
LTVGHDTECEKWPYAKTAET
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
63.5
0.33
1.4
57.1
49.4
Major PPT
87.8
0.85
0.6
81.5
30.6
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
46.3
-0.2
1.9
56.77
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013521
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014087
15233773 - 15237044
3272