About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15235257_15236936_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15235257 - 15236936
Intron Length:
1680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAGAC
U12 Branch Point Sequence:
TGAAGGATAACA
Flanking Amino Acid:
LVHLSREGAQAEVYAPNVDQ
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
49
-0
0.9
44.4
28.3
Major PPT
82.3
0.73
0.7
80.2
25.1
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
40.5
-0.7
2.5
54.93
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013521
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014087
15233773 - 15237044
3272