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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15239926_15240672_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15239926 - 15240672
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCACACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTGTCACACACA
Flanking Amino Acid:
YSIGLLGISAGSLLLAVHFY
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
77
35.1
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
68.7
0.42
1
62.6
37.9
Minor 5ss
35.4
-1.7
3.5
50.7
46.2
Minor BPS
41.6
-0.6
2.5
60.99
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013596
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014155
15239865 - 15248137
8273