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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15240787_15241628_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15240787 - 15241628
Intron Length:
842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTCGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCAAAAT
U12 Branch Point Sequence:
TCTGCCTGTATT
Flanking Amino Acid:
LILSSLLAYAGIRRSQRDAS
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79
35.3
Major BPS
58
0.2
1.2
63.9
38.5
Major PPT
80.3
0.68
0.8
76.5
32.1
Minor 5ss
36.5
-1.5
3.2
50.8
45.8
Minor BPS
51.6
0.13
1.9
72.35
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013596
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014155
15239865 - 15248137
8273