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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15243982_15244725_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15243982 - 15244725
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GCCCCCTTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TACTTCCAAACT
Flanking Amino Acid:
NRPDAVEKAHRSKRQAQERP
Intron Amino Acid Position:
654

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
85.6
31.2
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
75
0.56
0.8
67.4
32.5
Minor 5ss
39.1
-1.2
3.4
59
45.5
Minor BPS
51.3
0.12
2
73.21
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013596
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014155
15239865 - 15248137
8273