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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15246800_15247391_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15246800 - 15247391
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGAG
5'SS Class:
major
3'SS Sequence:
TGCTGCCCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAA
U12 Branch Point Sequence:
TGTGCCTGAGCT
Flanking Amino Acid:
NQVYAKLGDKVDAVLCDGPS
Intron Amino Acid Position:
772

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
65.9
39.9
Major BPS
59.7
0.24
1.2
52.7
43.2
Major PPT
74.5
0.55
0.9
70
36.6
Minor 5ss
28.6
-2.4
3.5
37.4
47.3
Minor BPS
57.7
0.32
1.9
77.99
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013596
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014155
15239865 - 15248137
8273