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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15247515_15247956_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15247515 - 15247956
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTAATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTTTGTTAATT
Flanking Amino Acid:
FRVGIIPKSQVLQILEQVQK
Intron Amino Acid Position:
813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.2
28.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
79.9
0.67
0.9
71.2
43.2
Minor 5ss
40.9
-1
3.2
56
48.2
Minor BPS
65.1
0.55
2
83.97
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013596
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014155
15239865 - 15248137
8273