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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15271517_15272120_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15271517 - 15272120
Intron Length:
604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTGCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACAAAT
U12 Branch Point Sequence:
GCTTAGGTGACA
Flanking Amino Acid:
MVYLTLQKSQKILASSR
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.8
27.8
Major BPS
51.7
0.04
1.2
59.2
35.9
Major PPT
73.7
0.53
0.9
65.8
41
Minor 5ss
37.7
-1.4
2.9
52.3
44.3
Minor BPS
40.7
-0.7
2.6
55.73
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021197
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036754
15271496 - 15278461
6966