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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15272176_15274810_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15272176 - 15274810
Intron Length:
2635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTTTGTATC
5'SS Class:
major
3'SS Sequence:
CTTGGTTCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CACTTCTCACCC
Flanking Amino Acid:
SRQVHKTAAHVVARSAPEET
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.2
70.4
39.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
79.4
0.66
0.9
73
37.4
Minor 5ss
43.2
-0.7
2.5
56.7
40.6
Minor BPS
47.5
-0.2
1.8
54.79
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021197
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036754
15271496 - 15278461
6966