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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15274999_15275162_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15274999 - 15275162
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGAACA
5'SS Class:
major
3'SS Sequence:
TCCCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
CTCTCCTGAATC
Flanking Amino Acid:
VFDIALQYCRELYSSVAVSS
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
65.3
40.7
Major BPS
69.6
0.49
1
59.5
39
Major PPT
87.5
0.84
0.7
83.2
25.1
Minor 5ss
31.9
-2.1
3.1
32.7
41.8
Minor BPS
67.2
0.52
1.5
70.86
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021197
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036754
15271496 - 15278461
6966