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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15275256_15275475_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15275256 - 15275475
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGCAG
5'SS Class:
major
3'SS Sequence:
ATTTCCCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
AAACCCTTATCT
Flanking Amino Acid:
TLAAFTNGVATHSMDFDDTW
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
60.8
45.3
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
74.5
0.55
1
70.4
35.6
Minor 5ss
30.6
-2.2
3.3
39.3
46
Minor BPS
62.7
0.48
1.6
74.7
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021197
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036754
15271496 - 15278461
6966