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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15280359_15280991_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
15280359 - 15280991
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAGCAT
U12 Branch Point Sequence:
CATGAAGGAACA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
68.6
37.4
Major BPS
48.7
-0
1.4
57.8
39
Major PPT
91.7
0.94
0.7
84.6
36
Minor 5ss
44.4
-0.6
2.8
59.5
45.2
Minor BPS
36.7
-1
2.3
47.56
41.9

Associated Gene:

Gene:
GLOD5
Ensembl Gene ID:
ENSAPLG00000020648
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045386
15280133 - 15283081
2949