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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15281182_15281393_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15281182 - 15281393
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TGAGCATTAAAC
Flanking Amino Acid:
PLEQLLSHLKACGVIIEEGP
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74
38.4
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
75.1
0.57
0.8
66.3
35.8
Minor 5ss
33.3
-1.9
2.8
38.7
46.6
Minor BPS
51.9
0.04
1.8
62.99
41.6

Associated Gene:

Gene:
GLOD5
Ensembl Gene ID:
ENSAPLG00000020648
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045386
15280133 - 15283081
2949