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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15281550_15282225_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15281550 - 15282225
Intron Length:
676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCTGG
5'SS Class:
major
3'SS Sequence:
TTGTTGGGGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTGTTGGGGACA
Flanking Amino Acid:
VLGMEVVTFKGNRKALRFGN
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
60.6
46.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
60.7
0.24
1.2
56.8
47.6
Minor 5ss
48.8
-0.1
2.6
65
46.2
Minor BPS
40
-0.7
2.6
57.85
42.2

Associated Gene:

Gene:
GLOD5
Ensembl Gene ID:
ENSAPLG00000020648
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045386
15280133 - 15283081
2949