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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15286984_15288826_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15286984 - 15288826
Intron Length:
1843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
CTTGCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TGCAGCTCATCA
Flanking Amino Acid:
YLGQPLEKLNHFFEGVKARI
Intron Amino Acid Position:
750

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
76.7
33.9
Major BPS
75
0.62
1.1
77.2
36
Major PPT
84.7
0.78
0.8
76.5
37.6
Minor 5ss
32
-2.1
2.6
34
34
Minor BPS
42.6
-0.5
2.1
53.07
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013758
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014368
15286177 - 15308969
22793