About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15291906_15292479_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15291906 - 15292479
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTTCTTCATT
Flanking Amino Acid:
QNTAELQVLELPASKGGENM
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
87.4
0.84
0.7
85.5
27.4
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
67.2
0.62
1.7
82.74
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013758
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014368
15286177 - 15308969
22793