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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15292591_15292812_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15292591 - 15292812
Intron Length:
222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGGAGA
5'SS Class:
major
3'SS Sequence:
GGTTTCTGAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GGAGTTTTAACG
Flanking Amino Acid:
DTPDRGNVIKMLEQVLRELQ
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.3
69.6
42.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
66.9
0.38
1.1
62.8
43
Minor 5ss
27
-2.6
2.9
31.8
42.1
Minor BPS
53.9
-0
1.5
53.04
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013758
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014368
15286177 - 15308969
22793