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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15292932_15296466_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15292932 - 15296466
Intron Length:
3535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GTGCCTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACAGAT
U12 Branch Point Sequence:
TGCCCAGCCACC
Flanking Amino Acid:
KMLLLGRRKGSLQEGLEKPM
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
49.4
-0
1.2
46.7
38.9
Major PPT
71.9
0.49
1
65
41.2
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
35
-1.2
2.4
46
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013758
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014368
15286177 - 15308969
22793