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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15298136_15298484_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
15298136 - 15298484
Intron Length:
349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGCGA
5'SS Class:
major
3'SS Sequence:
GCTTTGTCTCGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GCCACTCTAACA
Flanking Amino Acid:
SGCMNIQIQPGYRKLQAVAE
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
62.3
43.7
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
56.4
0.14
1.7
61.6
44.5
Minor 5ss
30.3
-2.3
3.2
35.6
43
Minor BPS
49.4
-0
1.7
57.25
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013758
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014368
15286177 - 15308969
22793