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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15299400_15302442_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15299400 - 15302442
Intron Length:
3043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CTCCGTTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
CTGTGCTGAAGC
Flanking Amino Acid:
LSNDLHVLDEANLRAIISSE
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
76.7
0.6
0.8
70.7
33.5
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
46.7
-0.2
2.2
58.56
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013758
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014368
15286177 - 15308969
22793