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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15302637_15303165_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15302637 - 15303165
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCAT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGAAAT
U12 Branch Point Sequence:
TTGGCTGTACCC
Flanking Amino Acid:
FVNVPSCPVEGRQRPQEDRK
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79.8
35.1
Major BPS
58.4
0.21
1.2
65
38.7
Major PPT
67.8
0.4
0.9
61.8
33.8
Minor 5ss
36
-1.6
3
50.1
46.1
Minor BPS
45.7
-0.3
2.3
61.04
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013758
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014368
15286177 - 15308969
22793