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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15303326_15307463_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15303326 - 15307463
Intron Length:
4138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTGACATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
AGGTGATTAACT
Flanking Amino Acid:
KLVDGKTLDQASLDFDLHFD
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.5
39.9
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
65.6
0.35
1
56.4
43.9
Minor 5ss
40.2
-1.1
3.4
55.2
49
Minor BPS
53.7
0.2
2.1
72.51
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013758
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014368
15286177 - 15308969
22793