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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15307592_15308779_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15307592 - 15308779
Intron Length:
1188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGACCC
5'SS Class:
major
3'SS Sequence:
CTCTTATCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TGTCTCTTATCC
Flanking Amino Acid:
KKKMSILCVVVDALKPVQPF
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
63.4
41.4
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
78
0.63
0.8
72.4
31.3
Minor 5ss
32.8
-2
3
36.1
40.2
Minor BPS
63.2
0.39
1.6
72.41
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013758
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014368
15286177 - 15308969
22793