Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15325158_15338940_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15325158 - 15338940

Intron Length:

13783

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATC|GTGAGTGAC

5'SS Class:

major

3'SS Sequence:

CCTTTTCTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATAAAA

U12 Branch Point Sequence:

TAGTATAAAACC

Flanking Amino Acid:

WTSYTEYVFYRPVVRGQLSR

Intron Amino Acid Position:

295

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.9

0.4

1.3

64.5

35.6

Major BPS

65.3

0.38

71.6

30.1

Major PPT

83.8

0.76

0.7

76.9

31.8

Minor 5ss

29.1

-2.4

3.1

35.6

Minor BPS

44.9

-0.4

57.27

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000001241

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044225

15322909 - 15350310

27402

ENSAPLT00000031503

15323703 - 15349977

26275

ENSAPLT00000001231

15322909 - 15349977

27069