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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15381671_15383243_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15381671 - 15383243
Intron Length:
1573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTCA
5'SS Class:
strong_major
3'SS Sequence:
GCTGTTTTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACAGAGA
Flanking Amino Acid:
KRRIHHCDYPGCTKVYTKSS
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
70.3
36.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.7
0.62
0.9
72.2
37.8
Minor 5ss
50.9
0.03
2.3
65.5
45.7
Minor BPS
42.8
-0.5
2.4
64.38
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019319
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044867
15377763 - 15395236
17474
ENSAPLT00000019733
15377763 - 15395236
17474